Episode 2: Basic 3D Segmentation & Analysis Tasks

The second video in a series of six tutorials to teach microscopists how to conduct image analysis with ZEISS arivis Pro: Basic 3D Segmentation & Analysis Tasks.
In this training video tutorial, Dr. Delisa Garcia demonstrates how to setup a pipeline for simple 3D image analysis in ZEISS arivis Pro. Most frequently use image pre-preprocessing tools, ROI selection and result storages operators are reviewed. You will learn to segment your image using the Intensity thresholder and Blob Finder tool. Learn to use the 3D preview (available since the version 4.2 release) and how to change the style of 3D objects. Get started with object table and image quantification.

Key Learnings:

• Using the analysis panel to set up a pipeline
• Understanding the main operation groups
• Getting started with the object table
• Selecting Input ROI and storing results
  

Dr. Delisa Garcia explains the main functions of the ZEISS arivis Pro software, so you can start your own automated, end-to-end image analysis pipelines with ease. In just six sessions, you will learn enough about Advanced and 3D image analysis - basic principles, tools and best practices - to take your image analysis skills to the next level.

Topics such as data import and result export, 3D rendering, and segmentation types will get you on the right track. Explore various processing tools, measurements, relationship quantification, neuron tracing and object tracking. By learning how to implement AI models and other advanced operations into your pipeline, you will become an expert in image analysis with ZEISS arivis Pro in no time.