Digital Slide Scanner

ZEISS Axioscan 7

Discover high-performance digital slide scanning tailored to your application needs. Whether your focus is spatial biology at scale, life science research, clinical applications, or geology, the Axioscan 7 slide scanning microscope offers advanced automation capabilities and exceptional image quality.

  • Automated High-Speed Scanning

    Set up your task effortlessly and digitize up to 100 slides in a single run.

  • Exceptional Image Quality

    Digitize your slides with consistent quality across a variety of imaging modes.

  • Reliable 24/7 Operation

    Enjoy extended, uninterrupted digitization of many similar slides or mixed applications.

Slide scanning solutions for your field of application

Discover ZEISS Axioscan 7 configurations designed to meet your unique requirements

Paraffin-embedded mouse kidney. Sample courtesy: Florian Gembardt,  University Clinic Carl­Gustav Carus Dresden, Germany
Paraffin-embedded mouse kidney. Sample courtesy: Florian Gembardt,  University Clinic Carl­Gustav Carus Dresden, Germany

Axioscan 7

Scanning performance combined with application freedom

  • Application flexibility in a multi-user environment
  • Rapid switching between fluorescence, brightfield, and polarization
  • Research-grade data quality for demanding fluorescence applications
  • Access to numerous additional processing and analysis functions via ZEN

Axioscan 7 spatial biology

Scalable multipex imaging for routine applications

  • Fastest multiplex imaging of up to eight fluorescence stained biomarkers
  • Includes solutions for robust, automated tissue detection and to support hyper-plex cyclic imaging assays
  • Optimized configuration for superior inter-day and inter-device reproducibility
  • Complementary software offerings for lab-automation, LIMS integration and AI-based image analysis
Multichannel acquisition and machine learning segmentation of Berea Sandstone.
Multichannel acquisition and machine learning segmentation of Berea Sandstone.

Axioscan 7 geology

Thin section slide scanning for digitization of petrography data

  • Rapid digitization of geological thin sections with brightfield and polarization imaging
  • Generation of complete petrographic data
  • Intuitive navigation through rich petrographic thin section datasets
  • AI-based mineral classification and analysis
  • Scanning performance combined with application freedom

    Axioscan 7 combines qualities that you would not expect to get in a slide scanner: high speed digitization and outstanding image quality plus an unrivaled variety of imaging modes are all available in a fully automated and easy to operate system. The most challenging research tasks are supported by powerful hardware and perfectly featured software. Give your imaging facility users the ability to capture virtual slides quickly and with consistently high quality, whether their applications require brightfield, fluorescence or polarization imaging.

    A Variety of Super-fast Brightfield Imaging Modes

    The newly designed condenser with its motorized modulator disk allows automatic switching between different brightfield imaging modes to adapt to the different requirements of your applications, opening a new range of experiments and modality combinations.

    • Dramatically improved scan speeds in all brightfield imaging modes
    • Better sample detection and focusing
    • New phase and relief contrast options
    • Circular and linear polarization now fully supported
    Mouse kidney wound healing assay, stained with sirius red, brightfield. Sample courtesy: Alexander Lomow, Evotec
    Mouse kidney wound healing assay, stained with sirius red, cross linear polarization. Sample courtesy: Alexander Lomow, Evotec

    Reproducible Image Quality

    ZEISS Axioscan 7 offers reliably reproducible image quality, no matter if you repeat your imaging task after a day, a week, a month or on a different machine.

    Paraffin-embedded mouse kidneys from healthy wildtype animals (12 weeks). Nephrin stained with Cy3. PCNA APC (FarRed) and DAPI as counterstaining. Imaged with 20× NA 0.8 objective.

    Paraffin-embedded mouse kidneys from healthy wildtype animals (12 weeks). Nephrin stained with Cy3. PCNA APC (FarRed) and DAPI as counterstaining. Imaged with 20× NA 0.8 objective.

    TIE Contrast

    Improved Detection. Better Focusing. More Context.

    Using the new contrast method Transfer of Intensity Equation (TIE) for contrast generation in transparent samples, you record the interaction of a narrow cone of light with your sample’s structures in three images: one in focus, and two out of focus above and below the focal plane. From these three images, the phase information for the central plane is automatically extracted. Continuous acquisition in the z dimension, in combination with flash illumination and GPU-based fast image processing, enables very fast delivery of the final contrast images. You can choose to present this as either phase contrast or DIC-like relief contrast.

    TIE contrast is an excellent tool to aid your experiments when working with sensitive fluorescent dyes:

    • Detect transparent tissues with little to no contrast in regular brightfield mode.
    • Speed the subsequent fluorescence imaging process with very fast flash-based focusing.
    • Protect your sensitive dyes from bleaching during focusing by using the lowest light doses.
    • Bring your fluorescent labels into context easily by applying the additional contrast information.
    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield
    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield

    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield

    Solanum tuberosum – potatoe starch, 20x Plan-Apochromat 0.8; A) TIE phase contrast, B) TIE relief contrast, C) Brightfield

  • Workflow automation for multiplexed spatial profiling at scale

    By leveraging multiplex immunofluorescence (mIF) staining with multiple biomarkers, spatial biology allows simultaneous visualization and quantification of numerous proteins within a single tissue section, enabling detailed analysis of cell presence, abundance, spatial distribution, and cell-to-cell interactions.

    Load ZEISS Axioscan 7 spatial biology with 100 samples and scan them in less than a day with unprecedented speed, fully automated and supported by AI-enabled tissue detection and high dynamic range imaging. Analyze up to eight biomarkers at the same time and generate highly reproducible data you can rely on. We offer complimentary service solutions to integrate streamlined workflow solutions into pre-existing LIMS and IMS systems. 

    Non-small Cell Lung Cancer (NSCLC) Tissue

    The UltiMapper I/O PD-L1 kit from Ultivue addresses whether a tumor is “hot” or “cold” and responsive to immune checkpoint inhibition because of a high immune filtrate (hot), in contrast to tumors with low immune infiltrates called “cold tumors” or non-T-cell-inflamed cancers – by exploring multiple cell phenotypes such as cytotoxic immune cells (CD8), immunosuppressive macrophages (Markers CD68, PD-L1) or immune evading tumor cells (Markers CK, PD-L1). The following images represent research content. ZEISS explicitly excludes the possibility of making a diagnosis or recommending treatment for possibly affected patients on the basis of the information generated with the Axioscan 7 spatial biology slide scanner.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit.
    NSCLC tissue stained with UltiMapper I/O PD-L1 kit.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit. Picture detail.
    NSCLC tissue stained with UltiMapper I/O PD-L1 kit. Picture detail.

    NSCLC tissue stained with UltiMapper I/O PD-L1 kit. Picture detail.

  • Thin section slide scanning for digitization of petrography data

    Embrace digitalization with Axioscan 7, not only to create high-quality digitized petrography data efficiently, but also to gain the advantages of easy data sharing and seamless integration into your geological workflows. With AI-integrated analysis and remote collaboration capabilities, Axioscan 7 empowers geologists and researchers to work together seamlessly from anywhere in the world. Maximize the benefits of modern technology in quantitative petrography and automated analytics.

    Multi-Channel Acquisition

    Different forms of polarization illumination can be used to highlight different features. Plane polarized light (PPL) shows overall crystal color, habit and pleochroism. Crossed polarized light (XPL) at multiple orientations allows for extinction angle and birefringence to be assessed. Circular polarization allows for maximum birefringence to be observed regardless of grain orientation. All channels are aligned using powerful computational algorithms during acquisition, making resulting data perfect for subsequent segmentation and analysis.

    Circular Polarization
    Circular Polarization

    Circular Polarization

    Cross Polarized Light (XPL)
    Cross Polarized Light (XPL)

    Cross Polarized Light (XPL)

    Plane Polarized Light (PPL)
    Plane Polarized Light (PPL)

    Plane Polarized Light (PPL)

    The combination of ZEISS Axioscan 7 and ZEISS AI-based segmentation creates the Petrography Analysis Toolbox, or PetPAT
    The combination of ZEISS Axioscan 7 and ZEISS AI-based segmentation creates the Petrography Analysis Toolbox, or PetPAT

    Mineral Phase Analysis

    The combination of ZEISS Axioscan 7 and ZEISS AI-based segmentation enables automated analysis across large numbers of samples. Easy machine learning segmentation allows you to label each mineral phase of interest using an intuitive painting interface and allows the software to build a model of the mineralogy across your entire sample.

    Automated machine-learning based mineral classification using a single ZEN Intellesis model, applied on two sandstone samples
    Automated machine-learning based mineral classification using a single ZEN Intellesis model, applied on two sandstone samples

    AI-Based Mineral Classification

    Automated machine-learning based mineral classification using a single ZEN Intellesis model, applied here on two sandstone samples.

    Both modal mineralogy and pore / grain sizes can be measured and automatically reported.

    Full thin-section polarization images. This kyanite-bearing schist has been imaged as part of a digital thin section collection.
    Full thin-section polarization images. This kyanite-bearing schist has been imaged as part of a digital thin section collection.

    PPL-to-XPL

    Full thin-section polarization images. This kyanite-bearing schist has been imaged as part of a digital thin section collection. The upper image shows a single PPL orientation, while the lower view shows the capture of the thin section in multiple XPL orientations. This allows a simulated stage rotation to observe and analyze extinction angles, with the full XPL variation over 90°.

    Close up of a single biotite grain within a granite sample. Sample has been imaged in multiple PPL orientations in order to observe the full range of pleochrosim as the sample is rotated through 180° relative to the polarizer.
    Close up of a single biotite grain within a granite sample. Sample has been imaged in multiple PPL orientations in order to observe the full range of pleochrosim as the sample is rotated through 180° relative to the polarizer.

    PPL-to-Pleochroism

    Close up of a single biotite grain within a granite sample. Sample has been imaged in multiple PPL orientations in order to observe the full range of pleochroism as the sample is rotated through 180° relative to the polarizer.

    Use ZEN Connect to intuitively build correlative projects that start with the data-rich, light microscopy environment from ZEISS Axioscan 7 Geo
    Use ZEN Connect to intuitively build correlative projects that start with the data-rich, light microscopy environment from ZEISS Axioscan 7 Geo

    Correlative Microscopy

    Use ZEN Connect to intuitively build correlative projects that start with the data-rich, light microscopy environment from ZEISS Axioscan 7 Geo. Here additional phase and geochemical information from ZEISS Mineralogic becomes the next step in a petrological investigation. Sample shown is a granulite facies metagabbro from Scouriemore, North West Scotland.

    The powerful PetPAT orientation analysis package turns entire thin sections into mineral orientation maps
    The powerful PetPAT orientation analysis package turns entire thin sections into mineral orientation maps

    Mineral Orientation Analysis

    The optional PetPAT orientation analysis package turns entire thin sections into powerful mineral orientation maps. These datasets can be used in conjunction with mineral segmentation for detailed studies and used to generate grain size distribution data.

    • Use XPL image stacks to calculate the angle at which any given pixel is at maximum or minimum luminance
    • Use these data to allow the entire thin section to be mapped for orientation of mineral grains in transmitted light

Downloads

    • ZEISS Axioscan 7

      Your Unique Automated Petrographic Microscope for Digitization, Quantification and Collaboration

      8 MB
    • ZEISS Axioscan 7

      Your High-performance Slide Scanner for Fluorescence, Brightfield and Polarization

      4 MB
    • ZEISS Axioscan 7 clinical

      Your digital slide scanner for clinical samples

      3 MB
    • Flyer: ZEISS Axioscan 7

      Discover the new possibilities of automated petrography

      932 KB
    • The Petrography Analysis Toolbox (PetPAT)

      Quantitative analytics for light microscopy – ZEISS Axioscan 7 Geo

      2 MB


    • Transport of Intensity Equation (TIE)

      A New Brightfield Method for Imaging and Fast Autofocusing During Automated Slide Scanning with ZEISS Axioscan 7

      5 MB
    • ZEISS Microscopy Solutions for Oil & Gas

      Understanding reservoir behavior with pore scale analysis

      7 MB


    • ZEISS Axioscan 7 - Digitizer for Slides

      Instruction Manual

      3 MB


    • ZEISS Axioscan 7 (Italian Version)

      Il vostro digitalizzatore di vetrini ad alte prestazioni per fluorescenza, campo chiaro e polarizzazione

      13 MB
    • ZEISS Axioscan 7 (Vietnamese Version)

      Máy quét tiêu bản hiệu suất cao với tính năng huỳnh quang, trường sáng và phân cực

      13 MB


Visit the ZEISS Download Center for available translations and further manuals.

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